Ummm...yeah, if prophets said what they did then in turn that would entail God "allowing" them to do so. I think though that if Darius Gray is any indicator...and those that work with him in the Genesis group, many people in the church are moving beyond the "haunting" you refer to. It may not be too many more years before the only ones that will remain "haunted" will be those critics that have never been able to let go of the blacks and the priesthood issue. It is interesting that there are many African Americans that are able to let go of past issues because of their testimonies of the gospel, and yet there are those that would just as well keep them chained to the past.
It's not just those you view as critics of the church - but outsiders who know anything at all about the church.
See, Nehor, how it works? Here's why the world WITH the God looks exactly like the world WITHOUT God.
Using the LDS paradigm - world WITH God
1 - God "allowed" prophets to work under the racism of their contemporary culture without intervention, and "allowed" them to say cruel, racist things that many members interpreted to mean that blacks were less worthy in the pre-existence, and made the church slow to accept civil rights
2 -God "allows" people to be jackasses and perform outrageous acts of cruelty on other human beings
3 - God "allows" natural acts to cause horrible, pointless suffering as some sort of "learning" experience
World WITHOUT God
1- Leaders of any church are the products of their own culture and usually express the same racism their culture expresses since there is no God to tell them otherwise
2 - Some people are cruel jackasses who enjoy harming others for no reason because there is no God engineering humanity, and it's just part of evolution
3 - Natural acts are the inevitable consequence of biology and nature, nothing but perhaps scientific progress can stop that
See what I mean? You refer to miracles and prophecies and state that there's no way to explain these things away when the reality is that miracles and prophecies are always in the eye of the believer and easily explained away by nonbelievers.
The world with God looks exactly like the world without God. Believers know this, but find ways to rationalize it, and mentalgymnast gave us an example above. In fact, MUCH of religion consists of human beings trying to explain why the world with God looks just like the world without God. God has more people writing alibis for him than imaginable. Believers turn themselves into pretzels just to excuse God for being completely and utterly invisible in terms of the way the world works. I understand some people like you think they've seen God, but plenty of people in this world have also claimed to see bigfoot, aliens, leprechauns, ghosts - and not one claim has ever been reliably validated. It's all a claim we're supposed to just accept without one shred of evidence.